CMRC Specialties

Biochemistry

• BioCyc Database Collection Pathway/genome databases

• Chemical acronyms Indiana University Libraries

• ChemIDplus Search by substance identification, toxicity, structure, etc.

• Chemistry humor Molecules with silly or unusual names

• IUPAC Compendium of Chemical Terminology Chemical nomenclature, terminology, symbols and units

• Organic chemistry resources worldwide

• The Protein Kinase Resource

• Reactome - A Curated Knowledgebase of Biological Pathways

• The THCME Medical Biochemistry Page Indiana University School of Medicine

• The Wired Chemist A collection of chemistry resources

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Biotechnology/Bioinformatics Links

• Animal Genome Size Database

• Argo Genome Browser Visualizing and manually annotating whole genomes

• BASE Project Page Management of data generated by microarray analysis

• Bio.com Facilitating communication and dissemination of information within the life science research community

• BioForge Biotech patents forum

• Bioinformatics Links Directory (UBC)

• Bioinformatics.Org

• Biophysics Educational Resources

• BIRN: Biomedical Informatics Research Network

• Blueprint:  Bioinformatics databases available for free on the Web

• BMRB: Biological Magnetic Resonance Data Bank

• Crystallographic Tutorials

• The ConSurf Server: Identification of Functional Regions in Proteins by Surface-Mapping of Phylogenetic Information

• Cytoscape Visualize molecular interaction networks and integrate with gene expression profiles

• Dicty WorkBench: Dictyostelium discoideum genome annotation and analysis portal

• Entrez Genome: Rat

• ExPASy Life Science Directory

• ExPASy Proteomics Server

• Gene Design

• GenePaint Gene expression patterns in the mouse

• Globin Gene Server

• Indiana University Molecular Structure Center

• InstaSeq Scans the web for DNA, RNA and protein sequences

• Integrated Microbial Genomes DOE Joint Genome Institute

• International Sequencing Consortium

• L2L Microarray Analysis Tool Biological significance in microarray data

• List of Prokaryotic Names with Standing in Nomenclature

• Metazome Comparative genomic studies within the Metazoa

• Methods for Genomics

• The miRNA Registry MicroRNA data

• MnM: Minimotif Miner Searches for short sequence motifs in proteins

• Mosquito Genomics WWW Server

• Mouse Genetics: Concepts and Applications (online textbook)

• National Center for Biotechnology Information

• Nematode.net: Genome Sequencing Center

• OMIA: Online Mendelian Inheritence in Animals

• PANDORA:  Protein Annotation Diagram Oriented Analysis

• PDBsum 3D structures of nucleic acids and proteins

• Phosphorylation Site Database

• PipMaker Alignments of similar regions in two DNA sequences

• PlasmoDB Plasmodium genome resource

• Porphynet Porphyrins and related topics

• ProSplicer Alternative splicing database

• Protein Explorer Visual exploration of protein structure

• Protein Information Resource (PIR)

• Quantitative PCR Primer Database

• Ratmap: The Rat Genome Database

• RCSB PDB: Protein Databank Biological macromolecular structures

• Reciprocal Net Distributed crystallography network

• Repeat Finder & Motif Lexicon

• RestrictionMapper

• SAGE Genie: Serial Analysis of Gene Expression

• Sequence Manipulation Suite

• SEQUEROME Analyze BLAST searches

• Single Nucleotide Polymorphisms (registration required)

• The tmRNA Website tRNA-like and mRNA-like

• UCSD Human Genome Browser

• VISTA: Tools for Comparative Genomics 

• WatCut Finds SNPs in DNA samples

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Brain Tumor Research

• American Brain Tumor Association

• Brain Tumor Center: Massachusetts General Hospital

• Pediatric Brain Tumor Foundation

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Cancer Biology

• American Association for Cancer Research

• American Cancer Society

• American Institute for Cancer Research

• Cancer Cell Line Project Genetics and genomics of cancer cell lines

• Children's Oncology Group

• IARC TP53 Mutation Database TP53 gene mutations in human cancers

• Memorial Sloan-Kettering Cancer Center Patient, medical professional and research information

• Mitelman Database of Chromosome Aberrations in Man

• NCI Genomics and Bioinformatics Group

• NCI Research Resources

• ONCOMINE Cancer microarray database

• University of Michigan Comprehensive Cancer Center

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Cell Biology

• Cell Biology Animation

• Cellnucleus.com

• Cell Transport

• Ion Channels in Biological Membranes

• Ion Channel, Patch Clamp and Electrophysiology

• Microscopy and Imaging Resources on the WWW 

• MicroscopyU

• National Resource for Cell Analysis and Modeling

• Nuclear Protein Database

• Nuclear Receptor Signaling Atlas

• Organelle Genome Resources

• Reactome -- A Curated Knowledgebase of Biological Pathways

• Virtual Cell Animation Collection

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Developmental Biology

• Atlases of Development of mouse

  • http://mouseatlas.caltech.edu

  • http://genex.hgu.mrc.ac.uk

• Cell and Molecular Biology Online

• Comparative Placentation

• Embryo Images: Normal and Abnormal Mammalian Development

• FlyNome: A Database of Drosophila Nomenclature

• Human Embryology Animations

• The Interactive Fly

• Patterns of Gene Expression in Drosophila Embryogenesis

• Professor Jeff Hardin's Dynamics of Development (University of Wisconsin-Madison)

• Society for Developmental Biology

• UNSW Embryology

• Bill Wasserman's Developmental Biology Page (Loyola University)

• The Wnt Homepage

• Xenbase A xenopus web resource

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Human Molecular Genetics

• Barcode of Life Data Systems

• CAGED: Cluster Analysis of Gene Expression Dynamics

• Chromatin Structure and Function Page

• DisEMBL Intrinsic Protein Disorder Prediction

• Ensembl: Human Genome Central

• European Molecular Biology Laboratory

• FIDD: The Frequency of Inherited Disorders Database

• GeneSeeker Human genetic location, expression/phenotypic pattern

• Gene Window NCI bioinformatics resources

• Genetics Societies Home Page

• Genome Reviews

• GlobPlot 2: Intrinsic Protein Disorder, Domain & Globularity Prediction

• HapMap:  Human genetic variation

• Human Genome Project Information

• IHOP: Information Hyperlinked Over Proteins

• Mitochondria Proteome

• Mobile Group II Introns (Zimmerly lab U. Calgary)

• NIH Human Embryonic Stem Cell Registry

• Obesity Gene Map Database

• OMIM: Online Mendelian Inheritance in Man

• Peroxisome Web Site

• Schizophrenia Research Forum

• Superlink Online: Linkage analysis

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Immunology

• American Association of Immunologists

• American College of Rheumatology

• American Society for Histocompatibility and Immunogenetics  

• Cytokine Family cDNA Database

• dbMHC Human major histocompatibility complex data

• ExactAntigen Reagents, researchers and patents

• Immunobiology Animations

• ImMunoGeneTics Homepage Databases, tools, web resources 

• Immunology Link Home Page Associations, online journals, knockout mice, biotechnology, etc.

• The MHC Haplotype Project Association studies of MHC-linked diseases

• Molecular Immunology

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Infectious Diseases

• AIDSinfo Guidelines, drugs, clinical trials, vaccines, health topics and tools

• Airborne Pathogen Database 

• The Bacteriophage Ecology Group

• Bad Bug Book Foodborne pathogenic microorganisms and natural toxins

• The Big Picture Book of Viruses Pictures and educational materials

• BioAfrica Bioinformatics for HIV research

• Budding Yeast Cell Cycle Modeling the budding yeast cell cycle

• CIDRAP: Center for Infectious Disease Research and Policy (University of Minnesota)

• DPDx Parasites of public health concern 

• Doctor Fungus All things mycological

• Entrez Genome: Viral

• The Grapes of Staph Microbiology web site

• HIV/SIV Vaccine Trials Database (nonhuman primate)

• Influenza Virus Resources  NIAID Influenza Genome Sequencing Project plus other flu sequence information

• The Microbe Project Genome-enabled microbial science

• Medical Microbiology (online textbook)

• Microbe Library Free access to visual collection

• Microbiology and Bacteriology The world of microbes

• Microbiology Video Library

• National Foundation for Infectious Diseases

• Salmonella Information

• STD Sequence Databases (currently unavailable; will be back soon)

• Todar's Online Textbook of Bacteriology

• VIPERdb Virus architecture

• Viral Bioinformatics Resource Center

• VirOligo Compilation Lab Oligonucleotide design